IL_8ANY_036

3D structure

PDB id

8ANY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8ANY|1|A|A|2926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ANY_036 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0505

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

8ANY|1|A|G|2733
8ANY|1|A|A|2734
*
8ANY|1|A|U|2925
8ANY|1|A|A|2926
8ANY|1|A|C|2927
8ANY|1|A|C|2928

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Ax

Transfer RNA; tRNA

Chain d

39S ribosomal protein L45, mitochondrial