IL_8AP4_014

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_014 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.1636

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8AP4|1|a|U|606
8AP4|1|a|U|607
8AP4|1|a|A|608
8AP4|1|a|A|609
8AP4|1|a|C|610
*
8AP4|1|a|G|618
8AP4|1|a|G|619
8AP4|1|a|G|620
8AP4|1|a|A|621
8AP4|1|a|G|622

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15