IL_8AP4_019

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_019 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.1434

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8AP4|1|a|U|703
8AP4|1|a|G|704
8AP4|1|a|A|705
8AP4|1|a|A|706
8AP4|1|a|G|707
*
8AP4|1|a|U|724
8AP4|1|a|G|725
8AP4|1|a|G|726
8AP4|1|a|A|727
8AP4|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2