IL_8AP4_041

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8AP4|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_041 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1325

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8AP4|1|a|C|1208
8AP4|1|a|U|1209
8AP4|1|a|G|1210
8AP4|1|a|C|1211
8AP4|1|a|G|1212
8AP4|1|a|A|1213
8AP4|1|a|A|1214
8AP4|1|a|G|1215
*
8AP4|1|a|U|1234
8AP4|1|a|G|1235
8AP4|1|a|G|1236
8AP4|1|a|A|1237
8AP4|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20