IL_8AP4_063

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_063 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1414

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8AP4|1|a|U|1720
8AP4|1|a|G|1721
8AP4|1|a|A|1722
8AP4|1|a|G|1723
8AP4|1|a|G|1724
*
8AP4|1|a|U|1736
8AP4|1|a|G|1737
8AP4|1|a|G|1738
8AP4|1|a|A|1739
8AP4|1|a|G|1740

Current chains

Chain a

23S rRNA

Nearby chains