3D structure

PDB id
8AP4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
8AP4|1|a|A|1801, 8AP4|1|a|C|1816, 8AP4|1|a|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8AP4_065 not in the Motif Atlas
Homologous match to IL_7A0S_065
Geometric discrepancy: 0.0955
The information below is about IL_7A0S_065
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

8AP4|1|a|U|1798
8AP4|1|a|G|1799
8AP4|1|a|C|1800
8AP4|1|a|A|1801
8AP4|1|a|A|1802
8AP4|1|a|A|1803
8AP4|1|a|C|1804
*
8AP4|1|a|G|1813
8AP4|1|a|G|1814
8AP4|1|a|A|1815
8AP4|1|a|C|1816
8AP4|1|a|G|1817
8AP4|1|a|U|1818
8AP4|1|a|A|1819
8AP4|1|a|U|1820
8AP4|1|a|A|1821

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0773 s