IL_8AP4_094

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_094 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1092

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8AP4|1|a|C|2652
8AP4|1|a|U|2653
8AP4|1|a|A|2654
8AP4|1|a|G|2655
8AP4|1|a|U|2656
8AP4|1|a|A|2657
8AP4|1|a|C|2658
*
8AP4|1|a|G|2663
8AP4|1|a|G|2664
8AP4|1|a|A|2665
8AP4|1|a|C|2666
8AP4|1|a|C|2667
8AP4|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6