IL_8AP4_112

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_112 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1349

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8AP4|1|a|U|1851
8AP4|1|a|U|1852
8AP4|1|a|A|1853
8AP4|1|a|A|1854
8AP4|1|a|U|1855
8AP4|1|a|U|1856
8AP4|1|a|G|1857
8AP4|1|a|A|1858
8AP4|1|a|U|1859
8AP4|1|a|G|1860
*
8AP4|1|a|U|1882
8AP4|1|a|U|1883
8AP4|1|a|G|1884
8AP4|1|a|A|1885
8AP4|1|a|U|1886
8AP4|1|a|C|1887
8AP4|1|a|G|1888
8AP4|1|a|A|1889
8AP4|1|a|A|1890
8AP4|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains