IL_8AYE_041

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AYE_041 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.2124

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

8AYE|1|A|G|953
8AYE|1|A|G|954
*
8AYE|1|A|C|1226
8AYE|1|A|A|1227
8AYE|1|A|C|1228

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19

Chain Z

Transfer RNA; tRNA