IL_8AYE_045

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AYE_045 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.167

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8AYE|1|A|G|1050
8AYE|1|A|C|1051
8AYE|1|A|U|1052
*
8AYE|1|A|G|1206
8AYE|1|A|2MG|1207
8AYE|1|A|C|1208

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain N

30S ribosomal protein S14