IL_8AYE_083

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AYE_083 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0712

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8AYE|1|a|U|703
8AYE|1|a|G|704
8AYE|1|a|A|705
8AYE|1|a|A|706
8AYE|1|a|G|707
*
8AYE|1|a|U|724
8AYE|1|a|G|725
8AYE|1|a|G|726
8AYE|1|a|A|727
8AYE|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2