IL_8AYE_181

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AYE_181 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0601

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8AYE|1|a|U|1851
8AYE|1|a|U|1852
8AYE|1|a|A|1853
8AYE|1|a|A|1854
8AYE|1|a|U|1855
8AYE|1|a|U|1856
8AYE|1|a|G|1857
8AYE|1|a|A|1858
8AYE|1|a|U|1859
8AYE|1|a|G|1860
*
8AYE|1|a|U|1882
8AYE|1|a|U|1883
8AYE|1|a|G|1884
8AYE|1|a|A|1885
8AYE|1|a|U|1886
8AYE|1|a|C|1887
8AYE|1|a|G|1888
8AYE|1|a|A|1889
8AYE|1|a|A|1890
8AYE|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains