IL_8B0X_012

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8B0X|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0968

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8B0X|1|A|G|147
8B0X|1|A|G|148
8B0X|1|A|A|149
8B0X|1|A|U|150
8B0X|1|A|A|151
8B0X|1|A|A|152
8B0X|1|A|C|153
*
8B0X|1|A|G|168
8B0X|1|A|C|169
8B0X|1|A|U|170
8B0X|1|A|A|171
8B0X|1|A|A|172
8B0X|1|A|U|173
8B0X|1|A|A|174
8B0X|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20