IL_8B0X_056

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_056 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.069

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8B0X|1|A|C|1303
8B0X|1|A|G|1304
8B0X|1|A|G|1305
8B0X|1|A|A|1306
8B0X|1|A|U|1307
8B0X|1|A|U|1308
*
8B0X|1|A|A|1329
8B0X|1|A|U|1330
8B0X|1|A|G|1331
8B0X|1|A|A|1332
8B0X|1|A|A|1333
8B0X|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13