IL_8B0X_059
3D structure
- PDB id
- 8B0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 70S ribosome in the unrotated state (P and E, tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B0X_059 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.5457
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8B0X|1|A|G|1405
8B0X|1|A|U|1406
8B0X|1|A|5MC|1407
8B0X|1|A|A|1408
8B0X|1|A|C|1409
*
8B0X|1|A|G|1491
8B0X|1|A|A|1492
8B0X|1|A|A|1493
8B0X|1|A|G|1494
8B0X|1|A|U|1495
8B0X|1|A|C|1496
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain X
- mRNA
- Chain Z
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: