IL_8B0X_100

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8B0X|1|a|A|1145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_100 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0415

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8B0X|1|a|U|1020
8B0X|1|a|U|1021
8B0X|1|a|A|1022
8B0X|1|a|A|1023
8B0X|1|a|G|1024
8B0X|1|a|U|1025
8B0X|1|a|G|1026
*
8B0X|1|a|C|1142
8B0X|1|a|U|1143
8B0X|1|a|A|1144
8B0X|1|a|A|1145
8B0X|1|a|A|1146

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain i

50S ribosomal protein L13