3D structure

PDB id
8B0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8B0X_108 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.0387
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8B0X|1|a|A|1264
8B0X|1|a|U|1265
8B0X|1|a|A|1266
8B0X|1|a|A|1267
8B0X|1|a|G|1268
8B0X|1|a|U|1269
8B0X|1|a|A|1270
8B0X|1|a|A|1271
*
8B0X|1|a|U|2015
8B0X|1|a|G|2016
8B0X|1|a|A|2017
8B0X|1|a|A|2018
8B0X|1|a|A|2019
8B0X|1|a|U|2020
8B0X|1|a|U|2021

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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