IL_8B0X_129

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_129 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1284

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8B0X|1|a|U|1722
8B0X|1|a|G|1723
8B0X|1|a|A|1724
8B0X|1|a|G|1725
8B0X|1|a|G|1726
*
8B0X|1|a|U|1738
8B0X|1|a|G|1739
8B0X|1|a|G|1740
8B0X|1|a|A|1741
8B0X|1|a|G|1742

Current chains

Chain a

23S rRNA

Nearby chains