IL_8B0X_152

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

8B0X|1|a|U|2495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B0X_152 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.0556

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8B0X|1|a|A|2463
8B0X|1|a|U|2464
8B0X|1|a|A|2465
*
8B0X|1|a|U|2493
8B0X|1|a|G|2494
8B0X|1|a|U|2495
8B0X|1|a|U|2496
8B0X|1|a|U|2497

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain l

50S ribosomal protein L16