IL_8B2L_005
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGAG(PSU)UU*A(OMU)CAA(OMU)AAG
- Length
- 17 nucleotides
- Bulged bases
- 8B2L|1|A3|A|47
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.1682
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8B2L|1|A3|C|29
8B2L|1|A3|U|30
8B2L|1|A3|G|31
8B2L|1|A3|A|32
8B2L|1|A3|G|33
8B2L|1|A3|PSU|34
8B2L|1|A3|U|35
8B2L|1|A3|U|36
*
8B2L|1|A3|A|43
8B2L|1|A3|OMU|44
8B2L|1|A3|C|45
8B2L|1|A3|A|46
8B2L|1|A3|A|47
8B2L|1|A3|OMU|48
8B2L|1|A3|A|49
8B2L|1|A3|A|50
8B2L|1|A3|G|51
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain D3
- 60S ribosomal protein L13
- Chain F3
- Ribosomal protein L15
- Chain V3
- Ribosomal protein L37
- Chain Z3
- 60S ribosomal protein L44
- Chain f3
- uL15 (60S ribosomal protein L27a)
Coloring options: