IL_8B2L_007
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AU*AA(OMU)UGU
- Length
- 8 nucleotides
- Bulged bases
- 8B2L|1|A3|U|145
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_007 not in the Motif Atlas
- Geometric match to IL_5TBW_007
- Geometric discrepancy: 0.1177
- The information below is about IL_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8B2L|1|A3|A|121
8B2L|1|A3|U|122
*
8B2L|1|A3|A|142
8B2L|1|A3|A|143
8B2L|1|A3|OMU|144
8B2L|1|A3|U|145
8B2L|1|A3|G|146
8B2L|1|A3|U|147
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F3
- Ribosomal protein L15
- Chain c3
- 60S ribosomal protein L7a
Coloring options: