IL_8B2L_009

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_009 not in the Motif Atlas

Geometric match to IL_7RQB_090

Geometric discrepancy: 0.1861

The information below is about IL_7RQB_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

8B2L|1|A3|U|162
8B2L|1|A3|C|163
8B2L|1|A3|C|164
*
8B2L|1|A3|G|252
8B2L|1|A3|G|253

Current chains

Chain A3

25S rRNA

Nearby chains

Chain D3

60S ribosomal protein L13

Chain n3

60S ribosomal protein L35-like