IL_8B2L_015

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8B2L|1|A3|A|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_015 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.1763

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8B2L|1|A3|G|334
8B2L|1|A3|A|335
8B2L|1|A3|C|336
*
8B2L|1|B3|G|28
8B2L|1|B3|C|29

Current chains

Chain A3

25S rRNA

Chain B3

5.8S rRNA

Nearby chains

Chain m3

uL24 (60S ribosomal protein L26)

Chain s3

uL4 (60S ribosomal protein L4)