IL_8B2L_016
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAC*GAGUCAAAGAGU(OMG)C
- Length
- 18 nucleotides
- Bulged bases
- 8B2L|1|A3|G|395
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_016 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.0967
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|A3|G|373
8B2L|1|A3|G|374
8B2L|1|A3|A|375
8B2L|1|A3|C|376
*
8B2L|1|A3|G|387
8B2L|1|A3|A|388
8B2L|1|A3|G|389
8B2L|1|A3|U|390
8B2L|1|A3|C|391
8B2L|1|A3|A|392
8B2L|1|A3|A|393
8B2L|1|A3|A|394
8B2L|1|A3|G|395
8B2L|1|A3|A|396
8B2L|1|A3|G|397
8B2L|1|A3|U|398
8B2L|1|A3|OMG|399
8B2L|1|A3|C|400
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X3
- 60S ribosomal protein L39-3
- Chain j3
- 50S ribosomal protein L22, chloroplastic
- Chain l3
- nascent chain
- Chain m3
- uL24 (60S ribosomal protein L26)
Coloring options: