IL_8B2L_017
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUGAAAU*ACGGA(PSU)A
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_017 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.1826
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8B2L|1|A3|U|401
8B2L|1|A3|U|402
8B2L|1|A3|G|403
8B2L|1|A3|A|404
8B2L|1|A3|A|405
8B2L|1|A3|A|406
8B2L|1|A3|U|407
*
8B2L|1|B3|A|16
8B2L|1|B3|C|17
8B2L|1|B3|G|18
8B2L|1|B3|G|19
8B2L|1|B3|A|20
8B2L|1|B3|PSU|21
8B2L|1|B3|A|22
Current chains
- Chain A3
- 25S rRNA
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain R3
- 60S ribosomal protein L32-1
- Chain j3
- 50S ribosomal protein L22, chloroplastic
Coloring options: