IL_8B2L_025
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- A(PSU)U*GAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_025 not in the Motif Atlas
- Geometric match to IL_4WF9_047
- Geometric discrepancy: 0.2242
- The information below is about IL_4WF9_047
- Detailed Annotation
- Intercalated cWW
- Broad Annotation
- Intercalated cWW
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8B2L|1|A3|A|509
8B2L|1|A3|PSU|510
8B2L|1|A3|U|511
*
8B2L|1|A3|G|566
8B2L|1|A3|A|567
8B2L|1|A3|U|568
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain S3
- eL33 (60S ribosomal protein L35a)
- Chain b3
- eL6 (60S ribosomal protein L6)
- Chain q3
- 60S ribosomal protein L7-4-like
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: