IL_8B2L_028

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUG*CAUC

Length

7 nucleotides

Bulged bases

8B2L|1|A3|A|605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_028 not in the Motif Atlas

Geometric match to IL_3TD0_001

Geometric discrepancy: 0.1985

The information below is about IL_3TD0_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8B2L|1|A3|G|595
8B2L|1|A3|U|596
8B2L|1|A3|G|597
*
8B2L|1|A3|C|604
8B2L|1|A3|A|605
8B2L|1|A3|U|606
8B2L|1|A3|C|607

Current chains

Chain A3

25S rRNA

Nearby chains

Chain b3

eL6 (60S ribosomal protein L6)

Chain q3

60S ribosomal protein L7-4-like

Chain s3

uL4 (60S ribosomal protein L4)