IL_8B2L_033

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8B2L|1|A3|A|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_033 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.122

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8B2L|1|A3|C|762
8B2L|1|A3|C|763
*
8B2L|1|A3|G|789
8B2L|1|A3|A|790
8B2L|1|A3|G|791

Current chains

Chain A3

25S rRNA

Nearby chains

Chain D3

60S ribosomal protein L13

Chain G3

60S ribosomal protein L18-2-like

Chain f3

uL15 (60S ribosomal protein L27a)