IL_8B2L_034

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAC*G(PSU)(OMU)C

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_034 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.2804

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

8B2L|1|A3|G|764
8B2L|1|A3|A|765
8B2L|1|A3|C|766
*
8B2L|1|A3|G|785
8B2L|1|A3|PSU|786
8B2L|1|A3|OMU|787
8B2L|1|A3|C|788

Current chains

Chain A3

25S rRNA

Nearby chains

Chain D3

60S ribosomal protein L13

Chain G3

60S ribosomal protein L18-2-like

Chain J3

60S ribosomal protein L21-1-like

Chain O3

60S ribosomal protein L29

Chain f3

uL15 (60S ribosomal protein L27a)