IL_8B2L_036

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGU(A2M)GCUG

Length

17 nucleotides

Bulged bases

8B2L|1|A3|A|943, 8B2L|1|A3|G|947

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|A3|C|813
8B2L|1|A3|C|814
8B2L|1|A3|OMG|815
8B2L|1|A3|A|816
8B2L|1|A3|A2M|817
8B2L|1|A3|A|818
8B2L|1|A3|G|819
*
8B2L|1|A3|C|941
8B2L|1|A3|U|942
8B2L|1|A3|A|943
8B2L|1|A3|G|944
8B2L|1|A3|U|945
8B2L|1|A3|A2M|946
8B2L|1|A3|G|947
8B2L|1|A3|C|948
8B2L|1|A3|U|949
8B2L|1|A3|G|950

Current chains

Chain A3

25S rRNA

Nearby chains

Chain D3

60S ribosomal protein L13

Chain F3

Ribosomal protein L15

Chain V3

Ribosomal protein L37

Chain f3

uL15 (60S ribosomal protein L27a)

Chain s3

uL4 (60S ribosomal protein L4)