IL_8B2L_039

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_039 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.101

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

8B2L|1|A3|C|844
8B2L|1|A3|G|845
8B2L|1|A3|A|846
8B2L|1|A3|A|847
8B2L|1|A3|G|848
*
8B2L|1|A3|U|865
8B2L|1|A3|G|866
8B2L|1|A3|G|867
8B2L|1|A3|A|868
8B2L|1|A3|G|869

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain a3

60S ribosomal protein L37a

Chain o3

uL2 (60S ribosomal protein L8)