IL_8B2L_044

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_044 not in the Motif Atlas

Homologous match to IL_8C3A_038

Geometric discrepancy: 0.0931

The information below is about IL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8B2L|1|A3|C|979
8B2L|1|A3|U|980
*
8B2L|1|A3|A|1122
8B2L|1|A3|A|1123
8B2L|1|A3|G|1124

Current chains

Chain A3

25S rRNA

Nearby chains

Chain D3

60S ribosomal protein L13

Chain G3

60S ribosomal protein L18-2-like

Chain J3

60S ribosomal protein L21-1-like

Chain O3

60S ribosomal protein L29

Chain f3

uL15 (60S ribosomal protein L27a)