IL_8B2L_051

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_051 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.0844

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8B2L|1|A3|A|1021
8B2L|1|A3|G|1022
8B2L|1|A3|A|1023
*
8B2L|1|A3|U|1051
8B2L|1|A3|A|1052
8B2L|1|A3|U|1053

Current chains

Chain A3

25S rRNA

Nearby chains

Chain C3

5S ribosomal RNA; 5S rRNA

Chain g3

uL16 (60S ribosomal protein L10)

Chain h3

60S ribosomal protein L5-like