IL_8B2L_053

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGC*GA

Length

5 nucleotides

Bulged bases

8B2L|1|A3|G|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_053 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.084

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8B2L|1|A3|U|1086
8B2L|1|A3|G|1087
8B2L|1|A3|C|1088
*
8B2L|1|A3|G|1095
8B2L|1|A3|A|1096

Current chains

Chain A3

25S rRNA

Nearby chains

Chain J3

60S ribosomal protein L21-1-like

Chain O3

60S ribosomal protein L29

Chain h3

60S ribosomal protein L5-like