IL_8B2L_057
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUG*CG
- Length
- 5 nucleotides
- Bulged bases
- 8B2L|1|A3|U|1192
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_057 not in the Motif Atlas
- Geometric match to IL_7RQB_038
- Geometric discrepancy: 0.1744
- The information below is about IL_7RQB_038
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.16
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 116
Unit IDs
8B2L|1|A3|C|1191
8B2L|1|A3|U|1192
8B2L|1|A3|G|1193
*
8B2L|1|A3|C|1336
8B2L|1|A3|G|1337
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain E3
- 60S ribosomal protein L14-1
- Chain I3
- 60S ribosomal protein L18a
- Chain S3
- eL33 (60S ribosomal protein L35a)
- Chain d3
- uL13 (60S ribosomal protein L13a)
- Chain q3
- 60S ribosomal protein L7-4-like
Coloring options: