IL_8B2L_060

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8B2L|1|A3|U|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_060 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.0674

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8B2L|1|A3|G|1219
8B2L|1|A3|U|1220
8B2L|1|A3|G|1221
*
8B2L|1|A3|C|1308
8B2L|1|A3|C|1309

Current chains

Chain A3

25S rRNA

Nearby chains

Chain C3

5S ribosomal RNA; 5S rRNA

Chain I3

60S ribosomal protein L18a

Chain Y3

ubiquitin-60S ribosomal protein L40

Chain u3

uL6 (60S ribosomal protein L9)