IL_8B2L_061

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_061 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.1412

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

8B2L|1|A3|U|1226
8B2L|1|A3|C|1227
8B2L|1|A3|G|1228
*
8B2L|1|A3|C|1301
8B2L|1|A3|A|1302
8B2L|1|A3|A|1303

Current chains

Chain A3

25S rRNA

Nearby chains

Chain I3

60S ribosomal protein L18a

Chain Y3

ubiquitin-60S ribosomal protein L40

Chain s3

uL4 (60S ribosomal protein L4)