IL_8B2L_063

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGCAAAAC*GCGGAG

Length

15 nucleotides

Bulged bases

8B2L|1|A3|C|1402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|A3|C|1399
8B2L|1|A3|U|1400
8B2L|1|A3|G|1401
8B2L|1|A3|C|1402
8B2L|1|A3|A|1403
8B2L|1|A3|A|1404
8B2L|1|A3|A|1405
8B2L|1|A3|A|1406
8B2L|1|A3|C|1407
*
8B2L|1|A3|G|1425
8B2L|1|A3|C|1426
8B2L|1|A3|G|1427
8B2L|1|A3|G|1428
8B2L|1|A3|A|1429
8B2L|1|A3|G|1430

Current chains

Chain A3

25S rRNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain R3

60S ribosomal protein L32-1

Chain m3

uL24 (60S ribosomal protein L26)

Chain s3

uL4 (60S ribosomal protein L4)