IL_8B2L_064

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

8B2L|1|A3|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_064 not in the Motif Atlas

Geometric match to IL_5TBW_134

Geometric discrepancy: 0.3552

The information below is about IL_5TBW_134

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8B2L|1|A3|U|1409
8B2L|1|A3|U|1410
8B2L|1|A3|G|1411
*
8B2L|1|A3|U|1422
8B2L|1|A3|G|1423

Current chains

Chain A3

25S rRNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain N3

eL28 (60S ribosomal protein L28)

Chain R3

60S ribosomal protein L32-1