IL_8B2L_090

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGAA*U(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_090 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3607

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

8B2L|1|A3|G|1903
8B2L|1|A3|G|1904
8B2L|1|A3|G|1905
8B2L|1|A3|A|1906
8B2L|1|A3|A|1907
*
8B2L|1|A3|U|2339
8B2L|1|A3|OMC|2340
8B2L|1|A3|C|2341

Current chains

Chain A3

25S rRNA

Nearby chains

Chain L3

60S ribosomal protein L24-like

Chain e3

60S ribosomal protein L23

Chain r3

uL3 (60S ribosomal protein L3)