IL_8B2L_096

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUC*G(A2M)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_096 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.2

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8B2L|1|A3|A|2130
8B2L|1|A3|U|2131
8B2L|1|A3|C|2132
*
8B2L|1|A3|G|2328
8B2L|1|A3|A2M|2329
8B2L|1|A3|U|2330

Current chains

Chain A3

25S rRNA

Nearby chains

Chain h1

Small subunit ribosomal RNA; SSU rRNA

Chain p3

60S ribosomal protein L41