IL_8B2L_105

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGG*C(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_105 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2478

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8B2L|1|A3|G|2252
8B2L|1|A3|G|2253
8B2L|1|A3|G|2254
*
8B2L|1|A3|C|2268
8B2L|1|A3|PSU|2269
8B2L|1|A3|C|2270

Current chains

Chain A3

25S rRNA

Nearby chains

Chain W2

Transfer RNA; tRNA

Chain h1

Small subunit ribosomal RNA; SSU rRNA