IL_8B2L_107

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_107 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.0917

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8B2L|1|A3|G|2279
8B2L|1|A3|C|2280
*
8B2L|1|A3|G|2310
8B2L|1|A3|C|2311
8B2L|1|A3|A|2312
8B2L|1|A3|U|2313

Current chains

Chain A3

25S rRNA

Nearby chains

Chain i2

Transfer RNA; tRNA

Chain p3

60S ribosomal protein L41