IL_8B2L_111

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8B2L|1|A3|A|2400, 8B2L|1|A3|C|2986

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_111 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.0719

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8B2L|1|A3|G|2399
8B2L|1|A3|A|2400
8B2L|1|A3|A|2401
*
8B2L|1|A3|U|2984
8B2L|1|A3|A|2985
8B2L|1|A3|C|2986
8B2L|1|A3|C|2987

Current chains

Chain A3

25S rRNA

Nearby chains

Chain j3

50S ribosomal protein L22, chloroplastic

Chain r3

uL3 (60S ribosomal protein L3)