IL_8B2L_115

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8B2L|1|A3|G|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_115 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0916

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8B2L|1|A3|U|2426
8B2L|1|A3|A|2427
8B2L|1|A3|G|2428
*
8B2L|1|A3|U|2607
8B2L|1|A3|G|2608
8B2L|1|A3|G|2609
8B2L|1|A3|G|2610

Current chains

Chain A3

25S rRNA

Nearby chains

Chain F3

Ribosomal protein L15

Chain W2

Transfer RNA; tRNA

Chain Z3

60S ribosomal protein L44

Chain o3

uL2 (60S ribosomal protein L8)