IL_8B2L_116

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_116 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.1191

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

8B2L|1|A3|C|2430
8B2L|1|A3|C|2431
8B2L|1|A3|G|2432
*
8B2L|1|A3|C|2603
8B2L|1|A3|A|2604
8B2L|1|A3|G|2605

Current chains

Chain A3

25S rRNA

Nearby chains

Chain F3

Ribosomal protein L15

Chain Z3

60S ribosomal protein L44

Chain o3

uL2 (60S ribosomal protein L8)