IL_8B2L_118

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_118 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.273

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8B2L|1|A3|A|2451
8B2L|1|A3|G|2452
8B2L|1|A3|A|2453
*
8B2L|1|A3|U|2501
8B2L|1|A3|U|2502
8B2L|1|A3|U|2503

Current chains

Chain A3

25S rRNA

Nearby chains