IL_8B2L_121
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGAAUC*GGGC
- Length
- 11 nucleotides
- Bulged bases
- 8B2L|1|A3|G|2527, 8B2L|1|A3|A|2529, 8B2L|1|A3|U|2530, 8B2L|1|A3|G|2588, 8B2L|1|A3|G|2589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B2L_121 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2917
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|A3|G|2525
8B2L|1|A3|U|2526
8B2L|1|A3|G|2527
8B2L|1|A3|A|2528
8B2L|1|A3|A|2529
8B2L|1|A3|U|2530
8B2L|1|A3|C|2531
*
8B2L|1|A3|G|2587
8B2L|1|A3|G|2588
8B2L|1|A3|G|2589
8B2L|1|A3|C|2590
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain c3
- 60S ribosomal protein L7a
- Chain k3
- 60S ribosomal protein L23a
- Chain o3
- uL2 (60S ribosomal protein L8)
Coloring options: