IL_8B2L_133

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(OMC)AAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_133 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.14

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8B2L|1|A3|C|2838
8B2L|1|A3|OMC|2839
8B2L|1|A3|A|2840
8B2L|1|A3|A|2841
8B2L|1|A3|G|2842
*
8B2L|1|A3|C|2852
8B2L|1|A3|G|2853
8B2L|1|A3|A|2854
8B2L|1|A3|C|2855
8B2L|1|A3|G|2856

Current chains

Chain A3

25S rRNA

Nearby chains

Chain Y3

ubiquitin-60S ribosomal protein L40

Chain g3

uL16 (60S ribosomal protein L10)