IL_8B2L_138

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUG*CCA(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B2L_138 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3836

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8B2L|1|A3|U|2894
8B2L|1|A3|U|2895
8B2L|1|A3|G|2896
*
8B2L|1|A3|C|2911
8B2L|1|A3|C|2912
8B2L|1|A3|A|2913
8B2L|1|A3|A2M|2914
8B2L|1|A3|G|2915

Current chains

Chain A3

25S rRNA

Nearby chains

Chain Y3

ubiquitin-60S ribosomal protein L40

Chain d3

uL13 (60S ribosomal protein L13a)

Chain u3

uL6 (60S ribosomal protein L9)